Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYE---NDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFEGVFFAIGAHPYDVES-FDEGLFEKFVSHQKCVAIGECGLDYYRLPELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNLLKSYPK--AFGVLHCFNAD-SMLLELSDR-FYYGIGGVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFRGTRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
1YIX Chain:A ((2-257))
FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPE------TKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHID
General information:
TITO was launched using:
RESULT:
Template:
1YIX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159264 for 2204 contacts (-72.3/contact) +
2D Compatibility (PS) -26697 + (NN) -18786 + (LL) 376
1D Compatibility (HY) -16800 + (ID) 4550
Total energy: -225721.0 ( -102.41 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1YIX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIX-query.scw
PDB file :
Tito_Scwrl_1YIX.pdb
: