Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVKICGLKKAVDVAAAVENGADMIGFVFA-KS--K-RQVTVDEAHELAKNIPAGVKKVGVFVNPTEEELTAAIKGVPLDIVQLH-GQEPA----EQANR---TDAEVIKAFPVKDGKLPDNIND--YPNAYILLDAPAEEYEGGSGKTF---DWDKIDRDLLT-----KN-KLIIAGGLNAQNVQEAIKRFEPYAVDISSGVET-NGEKDPQKIKCFIKTAKGVE
1RPX Chain:A ((26-228))
----------GEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITD-LPLDVHLMIVEP-DQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLT--AIEYVLDAVDLVLIMSVN---PGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGAPDY--AEAIKGIKTSKR---
General information:
TITO was launched using:
RESULT:
Template:
1RPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39158 for 1330 contacts (-29.4/contact) +
2D Compatibility (PS) -19927 + (NN) -14790 + (LL) 1636
1D Compatibility (HY) -4000 + (ID) 1550
Total energy: -77789.0 ( -58.49 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1RPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RPX-query.scw
PDB file :
Tito_Scwrl_1RPX.pdb
: