Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLSNKQTVLCIEEMAKMFPAAH---CEL--------VHKNTFELLVAVVLSAQCTDVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILTEFNGEVPKTHAELES-LPGVGRKTANVVLSVGFGVPAIAVDTHVERISKRLGICRWKD----SVVEVEETLKRKLPKELWSDAHHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFDG
3N5N Chain:X ((13-240))
----AEVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVE-------
General information:
TITO was launched using:
RESULT:
Template:
3N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109402 for 1635 contacts (-66.9/contact) +
2D Compatibility (PS) -22098 + (NN) -14843 + (LL) 232
1D Compatibility (HY) -7600 + (ID) 2200
Total energy: -155911.0 ( -95.36 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_3N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N5N-query.scw
PDB file :
Tito_Scwrl_3N5N.pdb
: