Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTASISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLKTGERYLAATSFLTFVALGADGKTVEVPLVEPETEEQKRIHAGAEARSIARKIRLKENQSLAESLSTDIPW
1VPM Chain:A ((18-165))
-------PVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNNLLTGERTLTTESFLTMVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKR-----------------
General information:
TITO was launched using:
RESULT:
Template:
1VPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68269 for 1128 contacts (-60.5/contact) +
2D Compatibility (PS) -16608 + (NN) -4285 + (LL) 1808
1D Compatibility (HY) -8400 + (ID) 3400
Total energy: -99154.0 ( -87.90 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_1VPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPM-query.scw
PDB file :
Tito_Scwrl_1VPM.pdb
: