Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNVTSYKEMLAKPWGKIQYEITFAQLSHIKNQNVLDFGAGFCLTAQHLAKE---NNVTAIEPNPK-LLYDNQSDNIYKILGSYEALRDLPNQSFDTIICHNVLEYIDKHNHPAYFDEF-SRLLKPNGELSL---IKHNITGKIL-QSVIFSNDTSTAMELLTGEANFKSASFDQGNIYTLEELKQNT-----NLLVERYQGIRTFYSLQPNHFKTETGWLNKMLAIELSVADK-APYKDIAFLQHITLKKSL- |
| 2P35 Chain:A ((8-259)) | AQQYLKFEDERTRPARDLL-----AQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKA-DLATWKPAQKADLLYANAVFQWVP--DHLAVLSQLMDQ-LESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFKPLPPPSDYFNALSPKSSRVDVWHTVYNHPMKDADSIVEWVKGTGLRPYLAAAGEENREAFLADYTRRIAAAYPPMADGRLLLRFPRLFVVAVKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2P35.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31756 for 1687 contacts (-18.8/contact) +
2D Compatibility (PS) -23943 + (NN) -456 + (LL) 960
1D Compatibility (HY) 0 + (ID) 1600
Total energy: -56795.0 ( -33.67 by residue)
QMean score : 0.214
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