Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MAKKVTMTISGEMILIEYYGENFPLHPQEWKDYHSFWQEDYIRFHFQTDIGTLTIYDGNYDLTLLWGEPVHRIEKLYHQLLTDPIPVMVYGDERFQEAYRTENGQTKNLYLEHVCNVCKEAYEVLFKQINQKERNT----------------------------------
4MNN Chain:A ((2-166))
SYDYVIKEYLNAIKKGDITIQQCNG--------DSLFHEFKNYVNVETLNNCKKPLVKVKRGDRVYYTYYGIPIANELWPFLNSLVRISNNVVNLDEREVELAKQVRGSVK-LFVTPDCTKCPITAEFLYQVSQINENVKLEIYDATEYEEERDKYRVLSVPKIIFNDKVEIPG
General information:
TITO was launched using:
RESULT:
Template:
4MNN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37791 for 881 contacts (-42.9/contact) +
2D Compatibility (PS) -13702 + (NN) -5150 + (LL) 136
1D Compatibility (HY) -800 + (ID) 1150
Total energy: -58457.0 ( -66.35 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_4MNN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MNN-query.scw
PDB file :
Tito_Scwrl_4MNN.pdb
: