Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKLLEAFIKTKA-YQNSCVIATYLSFDYEYNTQLLIKQALCD-GKRVLVPKT-YPKGKMIFVDYQKDNLRATPFGLLEPVNDRAVEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDFEG--DTISTIYRCQRQDFVE-EKHDVAVKEVLCL
1SBQ Chain:A ((26-188))
MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQIRAVYPKVISD------TEIIFIDQ---ETNTFEP--------NQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTRQQPKIGIAYSFQKGD-FLADPWDVQLDLIIND
General information:
TITO was launched using:
RESULT:
Template:
1SBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54070 for 1114 contacts (-48.5/contact) +
2D Compatibility (PS) -16611 + (NN) -2980 + (LL) 1568
1D Compatibility (HY) -7200 + (ID) 2000
Total energy: -81293.0 ( -72.97 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1SBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SBQ-query.scw
PDB file :
Tito_Scwrl_1SBQ.pdb
: