Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLESLKTIVKTNSDK-KLFDG------DLQVSYGEFYNLVRQDM-------ASQDNRKHVISTHSLLNQLVRFVSKLCQKALPIICKPNLTHNEISRLEKE------------------------------------------------------------------------VQYAPQLADFGVLSSGTTADAKLLWRSFASWSDFFS-IQNAYFSVTSNSRLFIQGDFSFTGNLN-LVLSLLLLGGTLVVTQK----NSVKYWQTLWEKTGVTHLYLLPSYLKLVEQYSK-----ETALDNKTIITSSQYVSDSLLEGLYIKHP--KVSVKIFYGASELNY-VSWYDGR-DIRDKPQYVGEIVPNVAVRIKE-------------GRIFVKTP--YSICGL---------------SSEYCAGDYGELI-DGKLYLFGRGDDWCNQSGIKLYLPRLIEKIKTCPYIKDAVAFTKESQSHGQESHCCIVLIENQMQQECLK----WLSEHFEKKYGFKHYHIVSKIPLMPSGKIDYQQLKRQLA |
1RY2 Chain:A ((86-635)) | --NCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLK----LQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212975 for 3300 contacts (-64.5/contact) +
2D Compatibility (PS) -43077 + (NN) -11924 + (LL) 736
1D Compatibility (HY) -10800 + (ID) 3400
Total energy: -281440.0 ( -85.28 by residue)
QMean score : 0.468
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