Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALIEMSGVTKKYRRSTT---ALRNLNLSIQQGEFVYLVGPSGAGKSSLIRLLYREEKLSSGRLKVGEFNLNKLKRRQIPILRRS-IGVVFQDYKLLPTKTVYENVAFAM------QVIGAKRRHIKKRVPEVLELVGLKHKMRSF-PTQLSGGEQQRVAIARAIVNNPKLLIADEPTGNLDPEIAWEIMHLLERINLQ-GTTVLMATHNSQIVNTLR--HRVIEIEAGSVIRDEEKGEYGYHD
1L2T Chain:B ((1-228))
--MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR---KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD---INVARFGERIIYLKDGEVEREEKLRGF----
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146844 for 1706 contacts (-86.1/contact) +
2D Compatibility (PS) -23071 + (NN) -4384 + (LL) 1048
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -195751.0 ( -114.74 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: