Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKDEMIAKGAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKSDNLRDKQFFLEQIDFTLNRELADGEGPHQALAAYTNRSYQDIIEKGVWYPSADHYIKHMYFHFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNPFNNWITFYANDTVEELMENYFRMMDYYAQNLSKEKQADLVDAFVKSCQMRDVFFKWQ
1UDD Chain:A ((4-210))
MITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSKAEYPL-MAELIELARDEVTVEVE----NYVKLLKELDLTLEDAIKTE-PTLVNSAYMDFMLATAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIIDSSGH----SGYDRLRRIFITGSKFELAFWEMA
General information:
TITO was launched using:
RESULT:
Template:
1UDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125209 for 1604 contacts (-78.1/contact) +
2D Compatibility (PS) -21963 + (NN) -3881 + (LL) -68
1D Compatibility (HY) -11600 + (ID) 1800
Total energy: -164521.0 ( -102.57 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1UDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDD-query.scw
PDB file :
Tito_Scwrl_1UDD.pdb
: