Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MMDFYIKQIIIHQFSPNDTELVLSD----TPLTLTPRIDDYFRKKLSKVFSDEAKR---GYFGEDNVFMSHLQDDLYVSSCQIAQLWKEEFVISEDQKTNDLVFI-----QFDKDGMEHFAFLRISLKEQFAHVS------------------ENQEQPITITQNNLPSAAQTPDEALVVNKSSKQYYLIEKRI-----KHNGSFANYFSENLLQVQPEQSVKK---------SIKMVEQTAQKIAENFNKDDFSFQSKMKSAIYKNLEEEQELSPEK-LADQLFDDNLT-ARLTFVDELKD----AIPGPVQVSDIDHSRQIKKLENQKLSLSNGIELIV----PNNVYQDA-----ESVEFIQNPDGTYSILIKN--IQDIQNK---- |
| 4FDW Chain:A ((21-401)) | ASLEDFSIEQL------PAKTIYALGENIDLTGLNVTGKYDDG-KQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPNSVKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP--NGVTNIASRAFYYCPEL--AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNANGWRDFTNKITTF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 28035 for 2108 contacts (13.3/contact) +
2D Compatibility (PS) -31952 + (NN) 2701 + (LL) 1108
1D Compatibility (HY) -13600 + (ID) 3000
Total energy: -16708.0 ( -7.93 by residue)
QMean score : 0.112
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