Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQRIRDLREDHDFTQRYVAEVLSFSHTNYAKIERGEVVLTADVLIKLSKLYNVSTDYILGLTDYPHKINFKK
3VK0 Chain:A ((23-88))
-AYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMTN-
General information:
TITO was launched using:
RESULT:
Template:
3VK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40624 for 428 contacts (-94.9/contact) +
2D Compatibility (PS) -7068 + (NN) -954 + (LL) 272
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -51274.0 ( -119.80 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3VK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VK0-query.scw
PDB file :
Tito_Scwrl_3VK0.pdb
: