Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKRPIHLSHDFLAEVIDKEAITLDATMGNGNDTVFLAK---SSKKVYAFDIQEEAIAKTKAKLTEQG-ISNAELILDGHENLEQYVHTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDILEVGGRLSLMVYYGHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEKLQSYENEV
3EEY Chain:C ((5-188))
-IKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPILVCIEKISEG----
General information:
TITO was launched using:
RESULT:
Template:
3EEY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97542 for 1431 contacts (-68.2/contact) +
2D Compatibility (PS) -19225 + (NN) -3513 + (LL) 496
1D Compatibility (HY) -16800 + (ID) 3800
Total energy: -140384.0 ( -98.10 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3EEY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEY-query.scw
PDB file :
Tito_Scwrl_3EEY.pdb
: