Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIRKLVVMSDSHGDRDIVKDIKNHYL-GKVDAIFHNGDSELPSSDPIW-EGIHVVTGNCDYDSGYPEVLVTKIDNTVIVQTHGHLHQINFTWDKLDLLAQQEDADICLYGHLHRADAWKNGKTIFINPGSVLQPRGPINEKLYAVVTITDSKVLVEYYTRQHQPYPNLTKEFSR
3CK2 Chain:A ((4-176))
MAKQTIIVMSDSHGDSLIVEEVRD-RYVGKVDAVFHNGDSELRPD-SPLWEGIRVVKGNMDFYAGYPERLVTELGSTKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKILFLNPGSISQPRGTIRECLYARVEIDDSYFKVDFLTRDHEVYPGLSKEFSR
General information:
TITO was launched using:
RESULT:
Template:
3CK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86181 for 1415 contacts (-60.9/contact) +
2D Compatibility (PS) -19860 + (NN) -20069 + (LL) -32
1D Compatibility (HY) -18400 + (ID) 5000
Total energy: -149542.0 ( -105.68 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3CK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CK2-query.scw
PDB file :
Tito_Scwrl_3CK2.pdb
: