Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLNQRQERIIDIIKQFQPITGELIAEKLGVTRAALRSDLAVLSMLGIIDAKPKVGYFYLGQYHASIGTSHFEKMTVSEIMGI-PLTVHQKDSVYDVIVHIFMEDAGCAFILDDDDFLCGVVSRKDLLKTSIGGGDLSKMPIGMVMTRMPHVTTVLENESLFAAADKLVSRKVDSLPVVRHDKQYPEKFKVIGKLSKTILASLFLEIRDY |
3GBY Chain:A ((4-127)) | -------------------------------------------------------------------------SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP-TVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDG------RYEGVVSRKRILGFLAERI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GBY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82809 for 897 contacts (-92.3/contact) +
2D Compatibility (PS) -12935 + (NN) 422 + (LL) 6388
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: -92184.0 ( -102.77 by residue)
QMean score : 0.405
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