Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVLGSFSTISALDDGQKSSRKAAYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLPKQILGQAKE-DSKWWYAWVPVLAPIVASILAVALFKLLYL
3C02 Chain:A ((8-242))
----SYVREFIGEFLGTFVLMFLGEGATANFHTTGL---SGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIP---QFAWETSRNPS-I-------SLTGAFFNELILTGILLLVILVVVDENICGK------------------------FHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLI-AYGK----DTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVIC
General information:
TITO was launched using:
RESULT:
Template:
3C02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151304 for 2076 contacts (-72.9/contact) +
2D Compatibility (PS) -24630 + (NN) -10513 + (LL) 3264
1D Compatibility (HY) -24000 + (ID) 3200
Total energy: -210383.0 ( -101.34 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_3C02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C02-query.scw
PDB file :
Tito_Scwrl_3C02.pdb
: