Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIL--AACGAGVNSSHQIKDAIETQLGDRGYNVHCDAVMVKDITEE----MVNKYDIFTPIAKTDLG-FN-VPIPVVEAGPILYRIPVMSEPVFTALEQVIKEHNLS
2R4Q Chain:A ((170-267))
-AKILAVTACPTG--HTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQVEMERFKGKRVLQVPVTAGIRR--PQELIEKAMN--------
General information:
TITO was launched using:
RESULT:
Template:
2R4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40560 for 636 contacts (-63.8/contact) +
2D Compatibility (PS) -8776 + (NN) 797 + (LL) 1544
1D Compatibility (HY) 1200 + (ID) 750
Total energy: -46545.0 ( -73.18 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_2R4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R4Q-query.scw
PDB file :
Tito_Scwrl_2R4Q.pdb
: