Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIVEGVSLHLIKNQQFKTNHLTFRFSGDFNN---KTVARRSLVAQMLVTANAK---YPKVQEFREKLASLYGASLSTKISTKGLVHIVDIDIVFVKNTFTLEQENIVEQIITFLEDMLFSPLISLEQYQTSIFDTEKKNLIQYLEADIEDNFYSSDLALKSLFYNNKTLRLPKYGTASLVESENSFTAYQEFQKMLKEDQLDIFVVGDFDDYRMIQAF-NRMAFEPRHKVLAFDYTQTYENITRSQVEDKDVNQSIMQLAYHLPITYKDEDYFALIVFNGLFGA-FAHSLLFTEIREKQGLAYTIGSQFDS--FTGLFTIYAGIDKENRERFLKLINKQFNNIKMGRFSSTLLKQTKDILKMNYVLASDNPKVIVDHIYHEHYLDQ-FHTSALFIDKVDDVTKSDIVSVATKLKLQAFYFLEGN |
| 3AMJ Chain:B ((7-403)) | WTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADI-GARLGGGAEAD----RASFSLRVLSSP------AERNSALTILRDILAHP-----TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHV--SSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERI-ANPATQAHIAIGMPTLK-RGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -172886 for 3092 contacts (-55.9/contact) +
2D Compatibility (PS) -40643 + (NN) -6101 + (LL) 1964
1D Compatibility (HY) -4400 + (ID) 3200
Total energy: -225266.0 ( -72.85 by residue)
QMean score : 0.473
|
|
|