Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------------------MADNNKMSREEAGRKGGETTSKNHDKEFYQEIGQKGGEATSKNHDKEFYQEIGEKGGEA----TSKN------------HDKEFYQEIGEKGGEATSENHDKEFYQEIGRKGGEATSKNH--------DKEFYQEIGSKGGNARNND-
1GZS Chain:B ((1-165))GSLTNKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKG------INIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKYIQNTP


General information:
TITO was launched using:
RESULT:

Template: 1GZS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 286 -12966 -45.34 -110.82
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain B : 0.63

3D Compatibility (PKB) : -45.34
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.280

(partial model without unconserved sides chains):
PDB file : Tito_1GZS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1GZS-query.scw
PDB file : Tito_Scwrl_1GZS.pdb: