Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKITGTVVKLGIVSVVLLFFTVMIIVIFGQMRFDRTNGYTAEFSNVSGLRQGQFVRASGVEIGKVKALHLVDGGRRVRVEFNIDRSVPLYQSTTAQIRYSDL-----IGNRYVELKRGEGKGANDLLPPGGLIPLSRTSPALDLDALIGGFKPVFRALDPAKV---NNIANALITVFQGQGGTINDILDQTAQLTSQIAERDQAIGEVVKNLNIVLDTTVKHRKEFDETVNNLENLITGLRNHSDQLAGGLAHISNGAGTVADLLAENRTLVRKAVSYLDAIQ-QPVIDQRVELDDLLHKTPTALTALGRANGTYGDFQNFYLCDLQIKWNGFQAGGPVRTVKLFSQPTGRCTPQ |
| 4F3V Chain:A ((1-275)) | GHMTDRLASLFESAVSML-----------PMSEARSLDLFTEITNYDE-------SACDAWIGRIRCG---DTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS------------PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQV---KSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG-EACARAIAWYLAMARRSQG--------NESAAVALLEWLQTTHPEPKVAAALKDPSYRLKTTTAEQIASRADP-------------------WDPGSVV---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4F3V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -8067 for 2212 contacts (-3.6/contact) +
2D Compatibility (PS) -27257 + (NN) 357 + (LL) 5664
1D Compatibility (HY) -3600 + (ID) 2800
Total energy: -35703.0 ( -16.14 by residue)
QMean score : 0.254
|
|
|