Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAQRHQRRIDILAEYERTHEAPPVPGAPA
2VVP Chain:C ((3-160))
--GMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAQRHQRRIDILAEYERTHEAPPVPGA--
General information:
TITO was launched using:
RESULT:
Template:
2VVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91370 for 1310 contacts (-69.7/contact) +
2D Compatibility (PS) -17767 + (NN) -15358 + (LL) 184
1D Compatibility (HY) -18000 + (ID) 7900
Total energy: -150211.0 ( -114.66 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_2VVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVP-query.scw
PDB file :
Tito_Scwrl_2VVP.pdb
: