Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
4HMW Chain:B ((11-215))
----------SLTGSVDVLFPEYDDPPSEPITLLKRWLATADVARVREPKALALATATSDGRISSRVIAFSSIDDRGVIFCTHSTSRKGRELTETGWASGLLYWRETGQQIMISGQAVPLEESENDKLWFGRSVPMHAMSSASHQSDELVDREALRAHAAELLALGVALPRPPRFVGYRLEPHEMEFWAASSDRLHRRLRYERDGNDWKTTQLQP
General information:
TITO was launched using:
RESULT:
Template:
4HMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54471 for 1480 contacts (-36.8/contact) +
2D Compatibility (PS) -22566 + (NN) -15460 + (LL) 700
1D Compatibility (HY) -16000 + (ID) 4800
Total energy: -112597.0 ( -76.08 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4HMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HMW-query.scw
PDB file :
Tito_Scwrl_4HMW.pdb
: