Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAASRQPSTLPADALLAVDGVSLEYRTRSRVVRATQRVSFEVDPADRFVLLGPSGCGKSTLLKAVAGFITPSEGEIRLQGQAVRAPGPDRI--------VVFQEFDQLPPWKTVRQNVLFPLRVSGQVTRDEAERRADECLEKVGLAGFAEAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLRLWEEVR---FTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEVHGHPFGLHSLGGEPLQAAARRIHRLLFDEGGEPTAAATLDFADIRLAH
4YMV Chain:A ((20-210))
--------------------------------------VTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINN-GKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVK-KMNKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDP----EMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMD----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120989 for 1369 contacts (-88.4/contact) +
2D Compatibility (PS) -19903 + (NN) -11788 + (LL) 6116
1D Compatibility (HY) -19600 + (ID) 3600
Total energy: -169764.0 ( -124.01 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: