Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATLMQLRAALEDGQARGLKQLSRQV----DAPPALVEAILERLIALGKVERVAAQSSGGCGGGCKGCAQRDPCAEPEPYFRLR
1SD4 Chain:A ((13-64))
----WDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSE----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22818 for 268 contacts (-85.1/contact) +
2D Compatibility (PS) -5482 + (NN) -3027 + (LL) 600
1D Compatibility (HY) -3600 + (ID) 200
Total energy: -34527.0 ( -128.83 by residue)
QMean score : 0.782
(partial model without unconserved sides chains):
PDB file :
Tito_1SD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD4-query.scw
PDB file :
Tito_Scwrl_1SD4.pdb
: