Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKIGESFEEETVDGRKCRSLATWENENKIYCKQTLIEGDGPKTYWTRELAND-ELILTFGADDVVCTRIYVRE
3F9D Chain:B ((1-137))
-PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKESTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELILTMTADDVVCTKVYVRE
General information:
TITO was launched using:
RESULT:
Template:
3F9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38430 for 957 contacts (-40.2/contact) +
2D Compatibility (PS) -15146 + (NN) -6665 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 5000
Total energy: -81833.0 ( -85.51 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_3F9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F9D-query.scw
PDB file :
Tito_Scwrl_3F9D.pdb
: