Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKFCKGKTPSC
1KVO Chain:B ((1-124))
---------------------NLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCA-KQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
General information:
TITO was launched using:
RESULT:
Template:
1KVO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46259 for 930 contacts (-49.7/contact) +
2D Compatibility (PS) -13486 + (NN) -9897 + (LL) 2700
1D Compatibility (HY) -13600 + (ID) 4500
Total energy: -85042.0 ( -91.44 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_1KVO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KVO-query.scw
PDB file :
Tito_Scwrl_1KVO.pdb
: