Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4M1O Chain:B ((2-169))
MTEYKLVVVGACGVGKSALTIQLIQNHFV--------DSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE---------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114217 for 1299 contacts (-87.9/contact) +
2D Compatibility (PS) -17692 + (NN) -7347 + (LL) 884
1D Compatibility (HY) -19600 + (ID) 7100
Total energy: -165072.0 ( -127.08 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4M1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1O-query.scw
PDB file :
Tito_Scwrl_4M1O.pdb
: