Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
6RNT Chain:A ((1-104))
--------------------------ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
General information:
TITO was launched using:
RESULT:
Template:
6RNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52190 for 762 contacts (-68.5/contact) +
2D Compatibility (PS) -11848 + (NN) -10078 + (LL) 2712
1D Compatibility (HY) -12400 + (ID) 5150
Total energy: -88954.0 ( -116.74 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_6RNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-6RNT-query.scw
PDB file :
Tito_Scwrl_6RNT.pdb
: