Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1WUP Chain:B ((4-219))
---------------------LPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSESTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE---------
General information:
TITO was launched using:
RESULT:
Template:
1WUP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106869 for 1993 contacts (-53.6/contact) +
2D Compatibility (PS) -23840 + (NN) -14632 + (LL) 2032
1D Compatibility (HY) -31200 + (ID) 10750
Total energy: -185259.0 ( -92.95 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1WUP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WUP-query.scw
PDB file :
Tito_Scwrl_1WUP.pdb
: