Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
2NOA Chain:B ((40-280))
-------------------RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQ---------------GGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNG---DAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQ-GQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
2NOA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110116 for 1716 contacts (-64.2/contact) +
2D Compatibility (PS) -23627 + (NN) -7311 + (LL) 1784
1D Compatibility (HY) -32400 + (ID) 10900
Total energy: -182570.0 ( -106.39 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2NOA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NOA-query.scw
PDB file :
Tito_Scwrl_2NOA.pdb
: