Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
2YXJ Chain:A ((8-161))
---SNRELVVDFLSYKLSQKGYSWS-----------------SE----------------------------------------AVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGN------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2YXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94776 for 991 contacts (-95.6/contact) +
2D Compatibility (PS) -14803 + (NN) -4351 + (LL) 5204
1D Compatibility (HY) -20800 + (ID) 6850
Total energy: -136376.0 ( -137.61 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_2YXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YXJ-query.scw
PDB file :
Tito_Scwrl_2YXJ.pdb
: