Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCGQVTSALSPCISYARGNGA-NPPAACCSGVRSLAGAARSTADKQAACKCIKSA-A--GGLNAGKAAGIPSKCSVSVPYAISSSVDCSKIR
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24893 for 469 contacts (-53.1/contact) +
2D Compatibility (PS) -7453 + (NN) -3411 + (LL) 1448
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -36609.0 ( -78.06 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: