Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVNSAVGPCLTYARGG---AG-------------------PSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIK--G-L-------NAGNAASIPSKCGVSVPYTISASIDCSRVS
1PSY Chain:A ((25-118))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRC--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27705 for 458 contacts (-60.5/contact) +
2D Compatibility (PS) -6367 + (NN) -1821 + (LL) 1724
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -39469.0 ( -86.18 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: