Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GTSDLCGLAETAFGECTAYVAGGEP-AVSRRCCRALGDIRDLAATAAERRAVCACILSEMLAAGDGRVDSGRAAGLPAACNVRVGFIPTSPNFNCFRVR
2RKN Chain:A ((2-75))
--IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPW-LGSF-GVDPELASALPKQCGLANAP-------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52082 for 498 contacts (-104.6/contact) +
2D Compatibility (PS) -7588 + (NN) -1093 + (LL) 1212
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -64601.0 ( -129.72 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: