Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RASKKASCDLMQLSPCVSAFSGVGQGSPSSACCSKL----KAQGSSCLCLYKDDPKVKRIVSSNRTKRVFTA-CKVPAP---NC---
1HYP Chain:? ((6-80))
-----PSCP--DLSICLN--ILGGSLGTVDDCCALIGGLGDIEAIVCLCIQLRALGI---LNLNRNLQLILNSCGRSYPSNATCPRT
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15790 for 388 contacts (-40.7/contact) +
2D Compatibility (PS) -6709 + (NN) -3136 + (LL) 1372
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -30663.0 ( -79.03 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: