Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATT--DPQPAP----SEACCATLGKADLRCLCSYKNSPWLSL---Y----N----ID---------PKRAMEL--PAKCGLTTPPDC
1BEA Chain:A ((14-109))
-----HNPLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADIPAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGFAATLVTEAECNLATI---
General information:
TITO was launched using:
RESULT:
Template:
1BEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9933 for 407 contacts (-24.4/contact) +
2D Compatibility (PS) -7304 + (NN) -5898 + (LL) 144
1D Compatibility (HY) -800 + (ID) 750
Total energy: -24541.0 ( -60.30 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_1BEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BEA-query.scw
PDB file :
Tito_Scwrl_1BEA.pdb
: