Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IDLCGMTQAELNECLPAVS----KNNPT----------SPSLLCCNALKHADYTCLCGYKNSPWLG-----SFGV-----DPKLASSLPKECDLTNAPTC
1SM7 Chain:A ((14-104))
---------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28283 for 427 contacts (-66.2/contact) +
2D Compatibility (PS) -6819 + (NN) -240 + (LL) 712
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -37480.0 ( -87.78 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: