Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AEGAGECGRSSPDRMALRMAPCISAADEPDS---------------APSSSCCSAVHTIGKSPSCLCAVMLSGTAKM-----AG-----IKPEVAITIPKRCNMADRPVGYKCGDYTLP
1SM7 Chain:A ((14-104))
-----------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--IGTC-------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53559 for 458 contacts (-116.9/contact) +
2D Compatibility (PS) -6402 + (NN) 885 + (LL) 332
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -62544.0 ( -136.56 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: