Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRSSPDNEAMKLAPCAGAAQDANS---------------AVPGGCCTQIKRFSQNPKCLCAILLSDTAK-----ASG-----VDPEVALTIPKRCNFANRPVGYKCGAYTLP
1SM7 Chain:A ((14-100))
--------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39420 for 401 contacts (-98.3/contact) +
2D Compatibility (PS) -6090 + (NN) 502 + (LL) 600
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -48608.0 ( -121.22 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: