Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVCGANLSG--LMNECQRYVSNA---GPN---SQ------PPSRSCCALIRPIDVPCACRYVSRDVTNYI--------DMD----KVVYVARSCGKKIPSGYKCGSYTIPAA
1SM7 Chain:A ((4-103))
-KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT-----------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42415 for 513 contacts (-82.7/contact) +
2D Compatibility (PS) -7237 + (NN) 672 + (LL) 628
1D Compatibility (HY) -800 + (ID) 550
Total energy: -49702.0 ( -96.88 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: