Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDTGAAAGVPSCASKLVPCGGYLNATAA---------------PPPASCCGPLREAAANETACLCAILTNK--AAL-Q-AFGVA-----PEQGLLLAKRCGVTTDASACAKSASSSATAAAAAAV
1SM7 Chain:A ((14-106))
---------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-IGTCPF--------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37154 for 442 contacts (-84.1/contact) +
2D Compatibility (PS) -5956 + (NN) 7062 + (LL) 2012
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -37936.0 ( -85.83 by residue)
QMean score : 0.168
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: