Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APAG----------------------TTCEQLESVARSCTGYLKRSLIFLNDACCDGAESVYDALTTDAAVDLGFVCRCLRGFVISESLRPYLYRVANLPRLCRFKDRGPIPYNNSTIHDCRFSGTTRHSL
1CPO Chain:? ((4-120))
EPGSGIGYPYDNNTLPYVAPGPTDSRAPCPALNALANH--GYIPHDGRAISRETLQNAFLNHMGIANSVIELALTNAFVVCEYVTGSDCGDSLVNLTLLAE------PHAFEHDHSFSRKDYKQGVA----
General information:
TITO was launched using:
RESULT:
Template:
1CPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4851 for 574 contacts (-8.5/contact) +
2D Compatibility (PS) -9687 + (NN) -3627 + (LL) 808
1D Compatibility (HY) 7600 + (ID) 250
Total energy: -10007.0 ( -17.43 by residue)
QMean score : 0.101
(partial model without unconserved sides chains):
PDB file :
Tito_1CPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CPO-query.scw
PDB file :
Tito_Scwrl_1CPO.pdb
: