Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNICPRVNRIVNPCVAYGLGR-APIAPCCRALNDLRFVDSRNLRRAACRCLVGVVNRN-PGLRRNNRFQNVPGDCRNNFVRPFWWRPRIQCNRVNLMDKLEYLDAEE
1N89 Chain:A ((4-65))
-------ASQLAVCASAILSGAKPSGECCGNLRA----------QQGCFCQYAKDPTYGQYIRSP-HARDTLTSCGLAV--P-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17992 for 377 contacts (-47.7/contact) +
2D Compatibility (PS) -6024 + (NN) 126 + (LL) 3668
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -21972.0 ( -58.28 by residue)
QMean score : 0.118
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: