Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NRALTCGTVNSNVAPCIGYITQGG--TLPGACCTGVSKLNSMARTTPDRQQACRCLETA-ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK
2RKN Chain:A ((2-75))
--IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSF--GVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43177 for 473 contacts (-91.3/contact) +
2D Compatibility (PS) -7153 + (NN) 227 + (LL) 148
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -52605.0 ( -111.22 by residue)
QMean score : 0.294
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: