Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCQQVTVAVTPCIGYARTGG--TMPPDCCNGVRNLNSAAKNTPDRQQACICLKQM-SSIPGINMSIVSEIPAKCNVNIGYPIAMSTDCSKVK
2RKN Chain:A ((3-75))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37776 for 467 contacts (-80.9/contact) +
2D Compatibility (PS) -6949 + (NN) 869 + (LL) 932
1D Compatibility (HY) 800 + (ID) 500
Total energy: -42624.0 ( -91.27 by residue)
QMean score : 0.160
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: