Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVSSALAPCIPYVRGGG--AVPPACCNGIRNVNNLARTTPDRQAACNCLKQL-SASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK
2RKN Chain:A ((4-75))
-LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSF-GVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37182 for 459 contacts (-81.0/contact) +
2D Compatibility (PS) -7150 + (NN) -1072 + (LL) 1124
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -47280.0 ( -103.01 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: