Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCSDVNKALAPCVSYLTGGG--APTSACCDGVRTLKSLSPTTSDRQTACQCAKDA-ASRNPNIREDAAAALPNKCGVQTDIPISRSTDCST
2RKN Chain:A ((4-75))
-LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSF-GVDPELASALPKQCGLANAP----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28064 for 459 contacts (-61.1/contact) +
2D Compatibility (PS) -7371 + (NN) -2587 + (LL) 348
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -41574.0 ( -90.58 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: