Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TITCGQVASAVGPCASYLQKG---GS-------------------VPAGCCSGIKSLNSAAKTTVDRQAACKCLKTFSGSIP------GI----NFGLASGLPGKCGVSVPYKISPSTDCSKVT
1PSY Chain:A ((25-118))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRC--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26792 for 442 contacts (-60.6/contact) +
2D Compatibility (PS) -6125 + (NN) 229 + (LL) 1524
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -35464.0 ( -80.24 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: