Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATTCAPT--QLTPCAPAIVGNAA-PTAACCARLKA-----------HPATCFCQYKRNPSMQRY--VNSPNGKKVFAACKVSLPRC
1AFH Chain:A ((1-80))
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRR-AACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24702 for 437 contacts (-56.5/contact) +
2D Compatibility (PS) -6507 + (NN) -812 + (LL) 436
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -36535.0 ( -83.60 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: