Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---VTCQVTQLAPCASAISSSSPPSSQCCAKIKEQKPCLCQYMKNP-SLKAY--------VSSPNAKKVANACGVPIPKC------------------------
1U78 Chain:A ((2-104))
PRGSALSDTERAQ-LDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG
General information:
TITO was launched using:
RESULT:
Template:
1U78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12803 for 350 contacts (-36.6/contact) +
2D Compatibility (PS) -6728 + (NN) -1676 + (LL) 56
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -22951.0 ( -65.57 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1U78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U78-query.scw
PDB file :
Tito_Scwrl_1U78.pdb
: